The Influence of Density Driven Mixing Mechanisms on Ureolysis Induced Carbonate Precipitation

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DOI:

https://doi.org/10.69631/ipj.v2i1nr59

Keywords:

MICP, Microbially induced carbonate precipitation, EICP, Enzyme-induced carbonate precipitation, Permeability, High-speed XCT, Tomography

Abstract

Engineered subsurface barriers with reduced porosity and permeability are critical for safe storage of CO2 and H2, for the prevention of pollutant transport, and for several other subsurface flow challenges. This study investigates enzyme-induced carbonate precipitation (EICP), a promising technique with the potential to achieve uniform precipitation in otherwise inaccessible regions, provided the mechanisms of pore-scale mixing are well understood. High-speed lab x-ray computed tomography and flow modelling were used to study the mechanisms of reagent mixing and precipitation. Our experiments show that initially, crystallization occurs homogeneously across grain surfaces, then localizes in­ pores with high enzyme concentrations. In these regions, we see crystal growth throughout the 65-minute experiment. Simulation of reagent injection produces a mixing front that matches the distribution of crystals seen in the experiments if we model mixing as a density driven flow. Overall, we see substantial reductions in simulated permeability (11-37%) depending on the efficiency of mixing. Our validated model allows us to predict and propose tailored injection strategies for optimizing mixing, bringing us closer to real-world deployment of EICP for subsurface barriers.

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Author Biographies

James M. Minto, University of Strathclyde

I am a Chancellor's Fellow in the Civil & Environmental Engineering department where I work on developing low viscosity alternative grouting materials for subsurface engineering works and investigate fundamental flow processes in fractured and porous media.

One such grout we are developing utilises naturally occurring soil bacteria Sporosarcina pasteurii to produce calcium carbonate via a biochemical reaction. The process is termed microbially induced carbonate precipitation (MICP) and is an exciting and multidisciplinary field combining microbiology, geology, hydraulics and subsurface engineering with the potential, for certain applications, to replace the use of cement and chemical grouts with a less expensive, less toxic and low CO2 “bio-grout”.

Our aim is to develop the MICP process for rock fracture sealing and ground improvement then demonstrate the feasibility of the process at the large scale. Our work combines micro-scale experiments characterised by 4D X-ray CT with large scale laboratory experiments and multi-scale numerical modelling.

Jay Warnett, University of Warwick

Dr. Jay Warnett is an Assistant Professor at WMG, University of Warwick, where he has been a faculty member since August 2016. Before this, he was a Research Fellow in the Product Evaluation Technologies group at WMG, managing research in X-ray Computed Tomography (XCT) and working with numerous industrial partners to advance product development through this technique.

Dr. Warnett has contributed to shaping policy in XCT, co-authoring the EPSRC Technology Roadmap, which led to recommendations for "higher speed/throughput" CT and the acquisition of strategic equipment (EP/S010076/1). He also serves as a Co-Investigator for the National Research Facility for X-ray Computed Tomography, where Warwick is the Metrology spoke (EP/T02593X/1).

As an active member of the imaging community, Dr. Warnett is the Secretary of the international conference ToScA and a committee member for the Dimensional XCT conference. He also participates in national and international working groups focused on developing the new ISO 10360 standard for X-ray Computed Tomography, promoting standardization in the field. Additionally, he is advancing new computational methods through the Collaborative Computational Project in Imaging (CCPi, EP/T026677/1).

Beyond engineering, Dr. Warnett has played a key role in demonstrating XCT applications to non-engineering disciplines, benefiting organizations such as the West Midlands Police and the Oxford Natural History Museum.

Dr. Warnett holds a BSc in Mathematics (2009), an MSc in Mechanical Systems Engineering (2010), and a PhD in Engineering (2014), all from the University of Warwick.

 

Katherine J. Dobson, University of Strathclyde

I joined Strathclyde in 2019 as a Chancellor’s Fellow, and am now a Reader in Geomaterials and imaging, jointly appointed across Civil & Environmental Engineering and Chemical & Process Engineering. I am a geologist by background, but my research routinely bridges disciplines. Having spent time in Geoscience, Materials Science and Engineering departments, I regularly bring methods across traditional subject and area boundaries, especially at the interfaces between geology, materials science, energy, environmental science and engineering. My main research interests lie in understanding the behaviour and evolution of both natural and man-made materials, and in how the microstructure of a material evolves through time, changing the properties and behaviour of the larger system. To do this, I use x-ray computed tomography to see inside materials and objects and quantify their internal structures, and a range of experimental and analytical methods to observe the physical, chemical and biological changes within the sample over time.

References

Baum, D., Weaver, J., Zlotnikov, I., Knötel, D., Tomholt, L., Dean, M. (2019). High-Throughput Segmentation of Tiled Biological Structures using Random Walk Distance Transforms. Integrative and comparative biology, 59, 6. https://doi.org/10.1093/icb/icz117

Bernard, D., Guillon, O., Plougonven, E., & Combaret, N. (2011). Constrained sintering of glass films: Microstructure evolution assessed by synchrotron computed tomography. Acta Materialia, vol. 59, 6228-6238 https://doi.org/10.1016/j.actamat.2011.06.022

Carmona, J. P. S. F., Oliveira, P. J. V. & Lemos, L. J. L. (2016). Biostabilization of a Sandy Soil Using Enzymatic Calcium Carbonate Precipitation. Procedia Engineering, 143, 1301-1308. https://doi.org/10.1016/j.proeng.2016.06.144

Chedburn, L., Underhill, J. R., Head, S. & Jamieson, R. (2022). The critical evaluation of carbon dioxide subsurface storage sites: Geological challenges in the depleted fields of Liverpool Bay. AAPG Bulletin, 106, 1753-1789. https://doi.org/10.1306/07062221120

Cheng, L., Shahin, M. A. & Chu, J. (2018). Soil bio-cementation using a new one-phase low-pH injection method. Acta Geotechnica, 14, 615-626. https://doi.org/10.1007/s11440-018-0738-2

Chunxiang, Q., Jianyun, W., Ruixing, W., Liang, C. (2009). Corrosion protection of cement based building materials by surface deposition of CaCO3 by Bacillus pasteurii. Materials Science and Engineering: C, 29 (4), 1273–1280. https://doi.org/10.1016/j.msec.2008.10.025

Cui, M.-J., Lai, H.-J., Hoang, T. & Chu, J. (2020). One-phase-low-pH enzyme induced carbonate precipitation (EICP) method for soil improvement. Acta Geotechnica, 16, 481-489. https://doi.org/10.1007/s11440-020-01043-2

Dobson, K. J., Coban, S. B., McDonald, S. A., Walsh, J. N., Atwood, R. C. & Withers, P. J. (2016). 4-D imaging of sub-second dynamics in pore-scale processes using real-time synchrotron X-ray tomography. Solid Earth, 7, 1059-1073. https://doi.org/10.5194/se-7-1059-2016

Godinho, Ma, Chai, Storm & Burnett. (2019). Mineral Precipitation in Fractures and Nanopores within Shale Imaged Using Time-Lapse X-ray Tomography. Minerals, 9(8), 480. https://doi.org/10.3390/min9080480

Kim, D. H., Mahabadi, N., Jang, J. & Paassen, L. A. (2020). Assessing the Kinetics and Pore‐Scale Characteristics of Biological Calcium Carbonate Precipitation in Porous Media using a Microfluidic Chip Experiment. Water Resources Research, 56. https://doi.org/10.1029/2019WR025420

Konstantinou, C., Wang, Y., & Biscontin, G. (2023). A Systematic Study on the Influence of Grain Characteristics on Hydraulic and Mechanical Performance of MICP-Treated Porous Media. Transport in Porous Media, 147(2), 305-330. https://doi.org/10.1007/s11242-023-01909-5

Krevor, S., De Coninck, H., Gasda, S. E., Ghaleigh, N. S., De Gooyert, V., et al. (2023). Subsurface carbon dioxide and hydrogen storage for a sustainable energy future. Nature Reviews Earth & Environment, 4, 102-118. https://doi.org/10.1038/s43017-022-00376-8

Li, X., Tao, J. & van Paassen, L.A. (2024). Reactive transport modeling of microbial-induced calcite precipitation treatment through shallow underwater injection. Computers and Geotechnics, 174, 106601. https://doi.org/10.1016/j.compgeo.2024.106601

Lin, Q., Neethling, S. J., Dobson, K. J., Courtois, L. & Lee, P. D. (2015). Quantifying and minimising systematic and random errors in X-ray micro-tomography based volume measurements. Computers & Geosciences, 77, 1-7. https://doi.org/10.1016/j.cageo.2014.12.008

Menke, H. P., Reynolds, C. A., Andrew, M. G., Pereira Nunes, J. P., Bijeljic, B. & Blunt, M. J. (2018). 4D multi-scale imaging of reactive flow in carbonates: Assessing the impact of heterogeneity on dissolution regimes using streamlines at multiple length scales. Chemical Geology, 481, 27-37. https://doi.org/10.1016/j.chemgeo.2018.01.016

Minto, J. M., Hingerl, F. F., Benson, S. M. & Lunn, R. J. (2017). X-ray CT and multiphase flow characterization of a ‘bio-grouted’ sandstone core: The effect of dissolution on seal longevity. International Journal of Greenhouse Gas Control, 64, 152-162. https://doi.org/10.1016/j.ijggc.2017.07.007

Nemati, M. & G. Voordouw. (2003). Modification of porous media permeability, using calcium carbonate produced enzymatically in situ. Enzyme and Microbial Technology, 33, 635-642. https://doi.org/10.1016/S0141-0229(03)00191-1

Nemati, M., Greene, E. A. & Voordouw, G. (2005). Permeability profile modification using bacterially formed calcium carbonate: comparison with enzymic option. Process Biochemistry, 40, 925-933. https://doi.org/10.1016/j.procbio.2004.02.019

Otsu, N. (1979). A thresholding selection method from grayscale histogram. IEEE Transactions on Systems, Man, and Cybernetics, 9(1), 62-66. https://doi.org/10.1109/TSMC.1979.4310076

Peng, S., Di, H., Fan, L., Fan, W., & Qin, L. (2020). Factors Affecting Permeability Reduction of MICP for Fractured Rock. Frontiers in Earth Science, 8. https://doi.org/10.3389/feart.2020.00217

Putra, H., Yasuhara, H., Kinoshita, N., Neupane, D. & Lu, C. W. (2016). Effect of Magnesium as Substitute Material in Enzyme-Mediated Calcite Precipitation for Soil-Improvement Technique. Frontiers in Bioengineering and Biotechnology, 4, 37. http://dx.doi.org/10.3389/fbioe.2016.00037

Putra, H., Yasuhara, H., Kinoshita, N., Erizal & Sudibyo, T. (2018). Improving Shear Strength Parameters of Sandy Soil using Enzyme-Mediated Calcite Precipitation Technique. Civil Engineering Dimension, 20, 91-95. https://doi.org/10.9744/ced.20.2.91-95

Ringrose, P. S. & Meckel, T. A. (2019). Maturing global CO2 storage resources on offshore continental margins to achieve 2DS emissions reductions. Scientific Reports, 9, 17944. https://doi.org/10.1038/s41598-019-54363-z

Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., et al. (2012). Fiji: an open-source platform for biological-image analysis. Nature Methods, 9, 676-682. https://doi.org/10.1038/nmeth.2019

Singh, A., Paramkusam, B. R. & Maiti, P. R. (2021). Cyclic degradation and pore pressure dynamics of EICP treated hydrocarbon contaminated sands. Soil Dynamics and Earthquake Engineering, 140, 106369. https://doi.org/10.1016/j.soildyn.2020.106369

Studholme, C., Hill, D. L. G., Hawkes, D. J. (1999). An overlap invariant entropy measure of 3D medical image alignment. Pattern Recognition, Volume 32, Issue 1, 71-86. https://doi.org/10.1016/S0031-3203(98)00091-0

Wang, H., Sun, X., Miao, L., Cao, Z., Fan, G. & Wu, L. (2022). Induced CaCO3 mineral formation based on enzymatical calcification for bioremediation under different pressure conditions. Journal of Petroleum Science and Engineering, 216, 110787. https://doi.org/10.1016/j.petrol.2022.110787

Weinhardt, F., Class, H., Dastjerdi, S. V., Karadimitriou, N., Lee, D., Steeb, H. (2021). Experimental Methods and Imaging for Enzymatically Induced Calcite Precipitation in a Microfluidic Cell. Water Resources Research. 57, 3, e2020WR029361. https://doi.org/10.1029/2020WR029361

Willems, C. J. L., Cheng, C., Watson, S. M., Minto, J., Williams, A., et al. (2021). Permeability and Mineralogy of the Újfalu Formation, Hungary, from Production Tests and Experimental Rock Characterization: Implications for Geothermal Heat Projects. Energies, 14, 4332. https://doi.org/10.3390/en14144332

Yang, Y., Chu, J., Liu, H. & Cheng, L. (2023). Improvement of uniformity of biocemented sand column using CH3COOH-buffered one-phase-low-pH injection method. Acta Geotechnica, 18, 413–428. https://doi.org/10.1007/s11440-022-01576-8

Yasuhara, H., Neupane, D., Hayashi, K., and Okamura, M. (2012). Experiments and predictions of physical properties of sand cemented by enzymatically-induced carbonate precipitation. Soils and Foundations, 52, 539–549. http://dx.doi.org/10.1016/j.sandf.2012.05.011

Graphical abstract for The influence of density driven mixing mechanisms on ureolysis induced carbonate precipitation.

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Published

2025-02-26

How to Cite

Salter, P. J., Minto, J. M., Warnett, J., & Dobson, K. J. (2025). The Influence of Density Driven Mixing Mechanisms on Ureolysis Induced Carbonate Precipitation. InterPore Journal, 2(1), IPJ260225–4. https://doi.org/10.69631/ipj.v2i1nr59

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